U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4332111 two-component response regulator ORR21-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332111, updated on 16-Jul-2024

    Summary

    Gene symbol
    LOC4332111
    Gene description
    two-component response regulator ORR21-like
    Locus tag
    OSNPB_030224200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    ORR1; RR21; OsRRB1; OsJ_09978
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See LOC4332111 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (6560808..6566606)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (6512670..6518512)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107280403 Neighboring gene probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial Neighboring gene alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 Neighboring gene uncharacterized LOC112938216

    Genomic regions, transcripts, and products

    General protein information

    Preferred Names
    two-component response regulator ORR21
    Names
    B-type response regulator
    LOC_Os03g12350
    OSJNBa0081P02.4
    response regulator

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402093.1NP_001389022.1  two-component response regulator ORR21

      Status: VALIDATED

      Source sequence(s)
      AK111899, CI075714, CI311161, CI570428
      UniProtKB/Swiss-Prot
      A0A0P0VV29, Q8H7S7
    2. NM_001402094.1NP_001389023.1  two-component response regulator ORR21

      Status: VALIDATED

      Source sequence(s)
      AK111899, CI075714, CI311161, CI324068, CI570428
      UniProtKB/Swiss-Prot
      A0A0P0VV29, Q8H7S7

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      6560808..6566606
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)