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    LOC4344126 uncharacterized LOC4344126 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344126, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4344126
    Gene description
    uncharacterized LOC4344126
    Locus tag
    OSNPB_070650600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves after flowering (RPKM 25.4), roots before flowering (RPKM 20.3) and 5 other tissues See more
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    Genomic context

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    See LOC4344126 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (27424593..27428617)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (27197496..27201404)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136357263 Neighboring gene uncharacterized LOC112936040 Neighboring gene uncharacterized LOC107277081 Neighboring gene uncharacterized LOC136357361 Neighboring gene uncharacterized LOC4344128 Neighboring gene uncharacterized LOC136357373

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4344126
    Names
    BLE2 protein
    OSJNBa0084D17.4
    Os07g0650600
    P0427D10.142

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      27424593..27428617
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791412.3 → XP_015646898.1  uncharacterized protein LOC4344126

      UniProtKB/TrEMBL
      A3BMW8, Q69J23, Q8H493
    Nucleotide Protein
    Heading Accession and Version

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