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    LOC4327489 calcium uniporter protein 6, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327489, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4327489
    Gene description
    calcium uniporter protein 6, mitochondrial
    Locus tag
    OSNPB_010817000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0454H12.5
    Expression
    Biased expression in roots before flowering (RPKM 82.7), flowers (RPKM 33.1) and 2 other tissues See more
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    Genomic context

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    See LOC4327489 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (35376402..35379421, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (34769343..34772371, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene L-ascorbate oxidase homolog Neighboring gene zinc finger BED domain-containing protein RICESLEEPER 2-like Neighboring gene uncharacterized LOC4327490 Neighboring gene cation/H(+) antiporter 15

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables uniporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in calcium import into the mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitochondrial calcium ion homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrial inner membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of uniplex complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    calcium uniporter protein 6, mitochondrial
    Names
    B1148D12.16
    Os01g0817000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      35376402..35379421 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015770335.3 → XP_015625821.1  calcium uniporter protein 6, mitochondrial

      UniProtKB/TrEMBL
      A0A0N7KDY7, A2WWC7, Q5QML5
      Conserved Domains (1) summary
      pfam04678
      Location:128 → 273
      MCU; Mitochondrial calcium uniporter
    Nucleotide Protein
    Heading Accession and Version

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