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    LOC4330652 pentatricopeptide repeat-containing protein At4g04370 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330652, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4330652
    Gene description
    pentatricopeptide repeat-containing protein At4g04370
    Locus tag
    OSNPB_020735800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4330652 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (31193901..31196220)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (30699043..30701377)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene glutamine synthetase cytosolic isozyme 1-1-like Neighboring gene ankyrin repeat-containing protein At2g01680 Neighboring gene E3 ubiquitin protein ligase RIE1 Neighboring gene uncharacterized LOC112937982

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA modification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in intracellular membrane-bounded organelle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein At4g04370
    Names
    Os02g0735800
    P0487D09.14
    PPR-repeat protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      31193901..31196220
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771536.3 → XP_015627022.1  pentatricopeptide repeat-containing protein At4g04370

      UniProtKB/TrEMBL
      A0A0P0VPC7, A3AB48, Q0DXS6, Q6Z749
      Conserved Domains (2) summary
      PLN03077
      Location:129 → 620
      PLN03077; Protein ECB2; Provisional
      sd00004
      Location:228 → 255
      PPR; PPR repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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