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    LOC4345123 sister chromatid cohesion 1 protein 3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345123, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4345123
    Gene description
    sister chromatid cohesion 1 protein 3
    Locus tag
    OSNPB_080266700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    RIX4; RIX4-1; RIX4-2; RIX4-3; RIX4-4; RIX4-5
    Expression
    Biased expression in flowers (RPKM 2.3), flower buds (RPKM 2.0) and 3 other tissues See more
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    Genomic context

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    See LOC4345123 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (10217398..10222892)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (10160212..10165691)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene receptor-like protein 46 Neighboring gene nuclear pore complex protein NUP43 Neighboring gene F-box/FBD/LRR-repeat protein At1g13570 Neighboring gene aspartyl protease family protein At5g10770

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. OsRAD21-3, an orthologue of yeast RAD21, is required for pollen development in Oryza sativa. Tao J, et al. Plant J, 2007 Sep. PMID 17617177
    2. The rice OsRad21-4, an orthologue of yeast Rec8 protein, is required for efficient meiosis. Zhang L, et al. Plant Mol Biol, 2006 Mar. PMID 16525890
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. involved in post-meiotic pollen development by affecting pollen mitosis
      Title: OsRAD21-3, an orthologue of yeast RAD21, is required for pollen development in Oryza sativa.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in replication-born double-strand break repair via sister chromatid exchange IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in sister chromatid cohesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cohesin complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sister chromatid cohesion 1 protein 3
    Names
    OSJNBa0023I13.37
    Os08g0266700
    Rad21-3 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      10217398..10222892
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015793617.3 → XP_015649103.1  sister chromatid cohesion 1 protein 3

      UniProtKB/TrEMBL
      A0A0P0XE07, B9FZZ6, Q6UFU8, Q6YTK0
      Conserved Domains (2) summary
      pfam04824
      Location:670 → 723
      Rad21_Rec8; Conserved region of Rad21 / Rec8 like protein
      pfam04825
      Location:1 → 97
      Rad21_Rec8_N; N terminus of Rad21 / Rec8 like protein
    Nucleotide Protein
    Heading Accession and Version

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