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    LOC4324758 nucleobase-ascorbate transporter 12 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324758, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4324758
    Gene description
    nucleobase-ascorbate transporter 12
    Locus tag
    OSNPB_010857500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4324758 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (37686548..37691630)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (37059641..37064660)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene probable 3-deoxy-D-manno-octulosonic acid transferase, mitochondrial Neighboring gene GABA transporter 1 Neighboring gene uncharacterized LOC4324759 Neighboring gene protein BUD31 homolog 1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nucleobase-ascorbate transporter 12
    Names
    Os01g0857500
    P0683F02.11
    P0683F02.12
    nucleobase-ascorbate transporter-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      37686548..37691630
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015773074.3 → XP_015628560.1  nucleobase-ascorbate transporter 12

      UniProtKB/TrEMBL
      B8ACH2, B9EUS3
      Conserved Domains (1) summary
      cl23746
      Location:154 → 573
      Xan_ur_permease; Permease family
    Nucleotide Protein
    Heading Accession and Version

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