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    LOC4329300 uncharacterized LOC4329300 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329300, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4329300
    Gene description
    uncharacterized LOC4329300
    Locus tag
    OSNPB_020461600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4329300 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (15925520..15935686, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (15468005..15477399, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4329297 Neighboring gene fasciclin-like arabinogalactan protein 3 Neighboring gene classical arabinogalactan protein 9 Neighboring gene uncharacterized LOC4329304

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in RNA splicing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of precatalytic spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4329300
    Names
    Os02g0461600
    U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      15925520..15935686 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066307818.1 → XP_066163915.1  uncharacterized protein LOC4329300

      UniProtKB/TrEMBL
      A0A0P0VIP9, A0A8J8Y1I7, A3A6L1, Q0E1C9

    2. XM_066307816.1 → XP_066163913.1  uncharacterized protein LOC4329300

      UniProtKB/TrEMBL
      A0A0P0VIP9, A0A8J8Y1I7, A3A6L1, Q0E1C9

    3. XM_066307815.1 → XP_066163912.1  uncharacterized protein LOC4329300

      UniProtKB/TrEMBL
      A0A0P0VIP9, A0A8J8Y1I7, A3A6L1, Q0E1C9

    4. XM_066307817.1 → XP_066163914.1  uncharacterized protein LOC4329300

      UniProtKB/TrEMBL
      A0A0P0VIP9, A0A8J8Y1I7, A3A6L1, Q0E1C9

    5. XM_066307813.1 → XP_066163910.1  uncharacterized protein LOC4329300

      UniProtKB/TrEMBL
      A0A0P0VIP9, A0A8J8Y1I7, A3A6L1, Q0E1C9

    6. XM_015772180.3 → XP_015627666.1  uncharacterized protein LOC4329300

      UniProtKB/TrEMBL
      A0A0P0VIP9, A0A8J8Y1I7, A3A6L1, Q0E1C9
      Conserved Domains (1) summary
      pfam08648
      Location:141 → 196
      DUF1777; Protein of unknown function (DUF1777)

    7. XM_015772181.3 → XP_015627667.1  uncharacterized protein LOC4329300

      UniProtKB/TrEMBL
      A0A0P0VIP9, A0A8J8Y1I7, A3A6L1, Q0E1C9
      Conserved Domains (1) summary
      pfam08648
      Location:141 → 196
      DUF1777; Protein of unknown function (DUF1777)

    8. XM_066307814.1 → XP_066163911.1  uncharacterized protein LOC4329300

      UniProtKB/TrEMBL
      A0A0P0VIP9, A0A8J8Y1I7, A3A6L1, Q0E1C9
    Nucleotide Protein
    Heading Accession and Version

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