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    LOC4341638 ESCRT-related protein CHMP1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341638, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4341638
    Gene description
    ESCRT-related protein CHMP1-like
    Locus tag
    OSNPB_060643300
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    CHMP1; OsJ_22129
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    Genomic context

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    See LOC4341638 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (27079349..27082506)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (26215487..26218645)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene PX domain-containing protein EREL1 Neighboring gene proteasome subunit beta type-3-like Neighboring gene 36.4 kDa proline-rich protein Neighboring gene formamidopyrimidine-DNA glycosylase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Identification of rice (Oryza sativa) proteins linked to the cyclin-mediated regulation of the cell cycle. Cooper B, et al. Plant Mol Biol, 2003 Oct. PMID 14750518
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in endosome transport via multivesicular body sorting pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in late endosome to vacuole transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of ESCRT III complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in multivesicular body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    eSCRT-related protein CHMP1
    Names
    ESCRT-related protein CHMP1
    LOC_Os06g43590
    P0416A11.29
    Protein CHARGED MULTIVESICULAR BODY PROTEIN 1
    Protein CHROMATIN MODIFYING PROTEIN 1
    development protein-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402896.1 → NP_001389825.1  eSCRT-related protein CHMP1

      Status: VALIDATED

      Source sequence(s)
      CF328566, CI253888, CI287537
      UniProtKB/Swiss-Prot
      A0A0P0WZP2, Q84VG1
      UniProtKB/TrEMBL
      A2YFI5

    2. NM_001402897.1 → NP_001389826.1  eSCRT-related protein CHMP1

      Status: VALIDATED

      Source sequence(s)
      AP014962, CF313367, CF317162, CI253888, CI287537
      UniProtKB/Swiss-Prot
      A0A0P0WZP2, Q84VG1
      UniProtKB/TrEMBL
      A2YFI5

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      27079349..27082506
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q84VG1.1 GenPept UniProtKB/Swiss-Prot:Q84VG1

    Gene LinkOut

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    Research Materials