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    LOC4330112 plant UBX domain-containing protein 7 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330112, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4330112
    Gene description
    plant UBX domain-containing protein 7
    Locus tag
    OSNPB_020640700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4330112 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (26216871..26218623)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (25730431..25732302)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene L-type lectin-domain containing receptor kinase SIT1-like Neighboring gene uncharacterized LOC136355421 Neighboring gene (+)-neomenthol dehydrogenase Neighboring gene LIM domain-containing protein PLIM2b-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    plant UBX domain-containing protein 7
    Names
    Os02g0640700
    P0010C01.42
    UBX domain-containing protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      26216871..26218623
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015769613.3 → XP_015625099.1  plant UBX domain-containing protein 7

      UniProtKB/TrEMBL
      A0A0P0VMA9, A2X7N9, Q6H7D0
      Conserved Domains (4) summary
      PRK00404
      Location:98 → 156
      tatB; Sec-independent protein translocase subunit TatB
      cd02958
      Location:233 → 350
      UAS; UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. ...
      pfam14555
      Location:5 → 46
      UBA_4; UBA-like domain
      cl28922
      Location:445 → 511
      Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold
    Nucleotide Protein
    Heading Accession and Version

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