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    LOC4342109 expansin-like A4 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342109, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4342109
    Gene description
    expansin-like A4
    Locus tag
    OSNPB_060725300
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    EXLA4; EXPL4; OsEXLA4; OsEXPL4
    Expression
    Broad expression in flower buds (RPKM 4.1), milk grains (RPKM 2.9) and 5 other tissues See more
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    Genomic context

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    See LOC4342109 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (31716763..31718542)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (30846360..30847977)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene GDSL esterase/lipase At5g55050 Neighboring gene GDSL esterase/lipase At5g55050 Neighboring gene uncharacterized LOC107281185 Neighboring gene NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 Neighboring gene uncharacterized LOC4342111

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    expansin-like A4
    Names
    LOC_Os06g50960
    P0548E04.14
    pollen allergen-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001421931.1 → NP_001408860.1  expansin-like A4 precursor

      Status: VALIDATED

      Source sequence(s)
      AK072728, CI109703, CI778231
      UniProtKB/Swiss-Prot
      Q0D9D8, Q5Z980
      UniProtKB/TrEMBL
      B9FQZ2

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      31716763..31718542
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015786273.3 → XP_015641759.1  expansin-like A4 isoform X1

      UniProtKB/TrEMBL
      B9FQZ2
      Conserved Domains (2) summary
      pfam01357
      Location:180 → 264
      Pollen_allerg_1; Pollen allergen
      cl04011
      Location:74 → 113
      DPBB_1; Rare lipoprotein A (RlpA)-like double-psi beta-barrel
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5Z980.1 GenPept UniProtKB/Swiss-Prot:Q5Z980

    Gene LinkOut

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