LOC4332373 probable mannose-1-phosphate guanylyltransferase 1 [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4332373
Gene description: probable mannose-1-phosphate guanylyltransferase 1
Locus tag: OSNPB_030268400
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: OsJ_10274
Expression: Biased expression in roots before flowering (RPKM 82.4), flowers (RPKM 17.8) and 2 other tissues See more
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Genomic context

Location:: chromosome: 3

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
102	current	IRGSP-1.0 (GCF_001433935.1)	3	NC_029258.1 (8909152..8912953, complement)

Chromosome 3 - NC_029258.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables GTP binding	IEA Inferred from Electronic Annotation more info	PubMed
enables mannose-1-phosphate guanylyltransferase (GTP) activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in GDP-mannose biosynthetic process	IEA Inferred from Electronic Annotation more info	PubMed
involved_in cell wall mannoprotein biosynthetic process	IEA Inferred from Electronic Annotation more info	PubMed
involved_in protein glycosylation	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: probable mannose-1-phosphate guanylyltransferase 1

Names: LOC_Os03g16150; OJA1364E02.11; OSJNBa0071M09.2

XP_015632712.1

EC 2.7.7.13

XP_015632713.1

EC 2.7.7.13

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001417484.1 → NP_001404413.1 probable mannose-1-phosphate guanylyltransferase 1

Status: VALIDATED

Source sequence(s)

AK121972, CI097262, CI139967, CI145332, CI308382, CI667508

UniProtKB/Swiss-Prot

A0A0P0VW09, Q84JH5

UniProtKB/TrEMBL

A2XEY5

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

NC_029258.1 Reference IRGSP-1.0 Primary Assembly

Range

8909152..8912953 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015777226.2 → XP_015632712.1 probable mannose-1-phosphate guanylyltransferase 1

UniProtKB/Swiss-Prot

Q84JH5

Conserved Domains (2) summary

cd06425
Location:1 → 234

M1P_guanylylT_B_like_N; N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins

cl00160
Location:256 → 335

LbetaH; Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes ...
XM_015777227.2 → XP_015632713.1 probable mannose-1-phosphate guanylyltransferase 1

UniProtKB/Swiss-Prot

A0A0P0VW09, Q84JH5

UniProtKB/TrEMBL

A2XEY5

Conserved Domains (2) summary

cd06425
Location:1 → 234

M1P_guanylylT_B_like_N; N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins

cl00160
Location:256 → 335

LbetaH; Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes ...