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    LOC4342107 GDSL esterase/lipase At5g55050 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342107, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4342107
    Gene description
    GDSL esterase/lipase At5g55050
    Locus tag
    OSNPB_060725100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0548E04.9
    Expression
    Restricted expression toward roots before flowering (RPKM 64.3) See more
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    Genomic context

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    See LOC4342107 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (31698131..31700366, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (30828267..30830495, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein kinase STY46 Neighboring gene thiosulfate sulfurtransferase 16, chloroplastic Neighboring gene GDSL esterase/lipase At5g55050 Neighboring gene uncharacterized LOC107281185 Neighboring gene expansin-like A4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hydrolase activity, acting on ester bonds IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    GDSL esterase/lipase At5g55050
    Names
    GDSL-lipase-like
    Os06g0725100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      31698131..31700366 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015788609.3 → XP_015644095.1  GDSL esterase/lipase At5g55050

      UniProtKB/TrEMBL
      A2YH44, B9FQZ0, Q0D9E0, Q5Z983
      Conserved Domains (1) summary
      cd01837
      Location:41 → 364
      SGNH_plant_lipase_like; a plant specific subfamily of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its ...
    Nucleotide Protein
    Heading Accession and Version

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