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    LOC4324725 CASP-like protein 3A1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324725, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4324725
    Gene description
    CASP-like protein 3A1
    Locus tag
    OSNPB_010725400
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsJ_03314; OsCASPL3A1
    Expression
    Ubiquitous expression in roots before flowering (RPKM 3.7), mature seeds (RPKM 1.7) and 6 other tissues See more
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    Genomic context

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    See LOC4324725 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (30839177..30848326)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (30241935..30251106)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene transfer RNA lysine (anticodon CUU) Neighboring gene lachrymatory-factor synthase Neighboring gene uncharacterized LOC112936589 Neighboring gene ultraviolet-B receptor UVR8 Neighboring gene protein SPA1-RELATED 4 Neighboring gene non-classical arabinogalactan protein 30

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    CASP-like protein 3A1
    Names
    LOC_Os01g52610
    P0022F10.36
    P0042A10.11
    integral membrane protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001428155.1 → NP_001415084.1  CASP-like protein 3A1

      Status: VALIDATED

      Source sequence(s)
      AK073926
      UniProtKB/Swiss-Prot
      A0A0N7KDN6, B8A927, Q5JM57

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      30839177..30848326
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5JM57.1 GenPept UniProtKB/Swiss-Prot:Q5JM57

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