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    LOC4337952 uncharacterized LOC4337952 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337952, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4337952
    Gene description
    uncharacterized LOC4337952
    Locus tag
    OSNPB_050173500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    Os05g0173600; Os05g0173700
    Expression
    Ubiquitous expression in roots after flowering (RPKM 10.1), leaves before flowering (RPKM 8.6) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (4420826..4432451)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (4401851..4414826)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4337951 Neighboring gene uncharacterized LOC136356533 Neighboring gene uncharacterized LOC136356501 Neighboring gene small nucleolar RNA R71

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4337952
    Names
    Os05g0173500

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      4420826..4432451
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066310498.1 → XP_066166595.1  uncharacterized protein LOC4337952 isoform X1

    2. XM_015784010.3 → XP_015639496.1  uncharacterized protein LOC4337952 isoform X3

      UniProtKB/TrEMBL
      B9FMQ8

    3. XM_015784008.3 → XP_015639494.1  uncharacterized protein LOC4337952 isoform X2

      UniProtKB/TrEMBL
      B9FMQ8

    4. XM_015784011.3 → XP_015639497.1  uncharacterized protein LOC4337952 isoform X4

      UniProtKB/TrEMBL
      A0A0P0WIS5, B9FMQ8

    5. XM_015784012.3 → XP_015639498.1  uncharacterized protein LOC4337952 isoform X5

      UniProtKB/TrEMBL
      A0A0P0WIT6, B9FMQ8, Q65WU5
    Nucleotide Protein
    Heading Accession and Version

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