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    LOC4335826 G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4335826, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4335826
    Gene description
    G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130
    Locus tag
    OSNPB_040419900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    YK18
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    Genomic context

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    See LOC4335826 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (21140101..21143105)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (20757868..20760632)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 Neighboring gene uncharacterized LOC136356215 Neighboring gene G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 Neighboring gene G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in recognition of pollen IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130
    Names
    Os04g0419900
    serine/threonine protein kinase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      21140101..21143105
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015780261.3 → XP_015635747.1  G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130

      UniProtKB/TrEMBL
      A0A0P0WAM4, A0A8J8XC94, B7F353, B9FF55, Q0JD95
      Conserved Domains (5) summary
      cd01098
      Location:232 → 316
      PAN_AP_plant; Plant PAN/APPLE-like domain; present in plant S-receptor protein kinases and secreted glycoproteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions. S-receptor protein kinases and ...
      cd14066
      Location:392 → 660
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
      pfam00069
      Location:387 → 655
      Pkinase; Protein kinase domain
      pfam00954
      Location:106 → 211
      S_locus_glycop; S-locus glycoprotein domain
      pfam01453
      Location:2 → 74
      B_lectin; D-mannose binding lectin
    Nucleotide Protein
    Heading Accession and Version

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