LOC4328768 probable protein phosphatase 2C 12 [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4328768
Gene description: probable protein phosphatase 2C 12
Locus tag: OSNPB_020224100
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: OsPP2C12; OsJ_005771
Expression: Broad expression in flowers (RPKM 25.4), flower buds (RPKM 21.7) and 5 other tissues See more
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Genomic context

Location:: chromosome: 2

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
102	current	IRGSP-1.0 (GCF_001433935.1)	2	NC_029257.1 (6956583..6959848)

Chromosome 2 - NC_029257.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_029257.1 Chromosome 2 Reference IRGSP-1.0 Primary Assembly

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables protein serine/threonine phosphatase activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in protein dephosphorylation	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: probable protein phosphatase 2C 12

Names: LOC_Os02g13100; P0470A03.13-1; P0470A03.13-2; putative protein phosphatase-2C

XP_015626790.1

EC 3.1.3.16

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001409869.1 → NP_001396798.1 probable protein phosphatase 2C 12

Status: VALIDATED

Source sequence(s)

AK067205, CI124717, CI390023, CI578564

UniProtKB/Swiss-Prot

A0A0N7KEY6, Q6Z8B9

UniProtKB/TrEMBL

A2X2K2

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

NC_029257.1 Reference IRGSP-1.0 Primary Assembly

Range

6956583..6959848

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015771304.2 → XP_015626790.1 probable protein phosphatase 2C 12

UniProtKB/Swiss-Prot

Q6Z8B9

Conserved Domains (1) summary

cd00143
Location:42 → 356

PP2Cc; Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence ...