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    LOC4344352 manganese-dependent ADP-ribose/CDP-alcohol diphosphatase-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344352, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4344352
    Gene description
    manganese-dependent ADP-ribose/CDP-alcohol diphosphatase-like
    Locus tag
    OSNPB_070688000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsJ_25650; OJ1150_E04.129; OJ1165_F02.106
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 6.2), roots after flowering (RPKM 5.7) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 7
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (29459340..29462562)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (29225285..29227588)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene transcription factor TGA2.1-like Neighboring gene galactinol synthase 2 Neighboring gene pentatricopeptide repeat-containing protein At1g13040, mitochondrial Neighboring gene myb-related protein 340 Neighboring gene importin subunit alpha-4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ADP-ribose diphosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables CDP-glycerol diphosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables manganese ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    manganese-dependent ADP-ribose/CDP-alcohol diphosphatase
    Names
    ADPRibase-Mn
    CDP-choline phosphohydrolase
    LOC_Os07g48840
    NP_001409796.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001422867.1 → NP_001409796.1  manganese-dependent ADP-ribose/CDP-alcohol diphosphatase

      Status: VALIDATED

      Source sequence(s)
      AK069836, CI673525
      UniProtKB/Swiss-Prot
      A0A0P0XAT7, Q8H5F8

    RNA

    1. NR_186601.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK069836, AK106965, CI673525

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      29459340..29462562
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8H5F8.1 GenPept UniProtKB/Swiss-Prot:Q8H5F8

    Gene LinkOut

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