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    LOC4337540 uncharacterized LOC4337540 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337540, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4337540
    Gene description
    uncharacterized LOC4337540
    Locus tag
    OSNPB_050103300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 33.1), leaves before flowering (RPKM 32.2) and 5 other tissues See more
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (197401..198104)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (189632..191131)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4337538 Neighboring gene photosynthetic NDH subunit of lumenal location 5, chloroplastic Neighboring gene uncharacterized LOC4337541 Neighboring gene uncharacterized LOC4337542

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4337540
    Names
    Os05g0103300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      197401..198104
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015782360.3 → XP_015637846.1  uncharacterized protein LOC4337540

      UniProtKB/TrEMBL
      A0A0P0WGX8, A2XZE7, B9FK08, Q75M31
      Conserved Domains (1) summary
      pfam11820
      Location:2 → 66
      DUF3339; Protein of unknown function (DUF3339)
    Nucleotide Protein
    Heading Accession and Version

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