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    LOC4347357 phosphatidylinositol 4-kinase gamma 5 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347357, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4347357
    Gene description
    phosphatidylinositol 4-kinase gamma 5
    Locus tag
    OSNPB_090474800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flowers (RPKM 62.0), mature seeds (RPKM 39.2) and 6 other tissues See more
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    Genomic context

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    See LOC4347357 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (22558090..22562476, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (18174552..18178933, complement)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136351665 Neighboring gene uncharacterized LOC107278901 Neighboring gene uncharacterized LOC136351721 Neighboring gene transcription factor BIM2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    phosphatidylinositol 4-kinase gamma 5
    Names
    OSJNBa0026C08.31
    Os09g0474800
    phosphatidylinositol 3- and 4-kinase family-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      22558090..22562476 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015756546.3 → XP_015612032.1  phosphatidylinositol 4-kinase gamma 5

      UniProtKB/TrEMBL
      A3BZV9, Q0J0Z4, Q69JJ2
      Conserved Domains (2) summary
      cd17039
      Location:42 → 105
      Ubl_ubiquitin_like; ubiquitin-like (Ubl) domain found in ubiquitin and ubiquitin-like Ubl proteins
      pfam00454
      Location:184 → 425
      PI3_PI4_kinase; Phosphatidylinositol 3- and 4-kinase

    2. XM_015756547.3 → XP_015612033.1  phosphatidylinositol 4-kinase gamma 5

      UniProtKB/TrEMBL
      A3BZV9, Q0J0Z4, Q69JJ2
      Conserved Domains (2) summary
      cd17039
      Location:42 → 105
      Ubl_ubiquitin_like; ubiquitin-like (Ubl) domain found in ubiquitin and ubiquitin-like Ubl proteins
      pfam00454
      Location:184 → 425
      PI3_PI4_kinase; Phosphatidylinositol 3- and 4-kinase
    Nucleotide Protein
    Heading Accession and Version

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