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    LOC4330841 THO complex subunit 5A [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330841, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4330841
    Gene description
    THO complex subunit 5A
    Locus tag
    OSNPB_020767100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1004_A11.24
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    Genomic context

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    See LOC4330841 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (32790681..32795925)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (32295291..32300576)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene putative mannan endo-1,4-beta-mannosidase 9 Neighboring gene uncharacterized LOC4330840 Neighboring gene triacylglycerol lipase OBL1 Neighboring gene flavonol synthase/flavanone 3-hydroxylase Neighboring gene G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA export from nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of DNA-templated transcription, elongation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of THO complex part of transcription export complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    THO complex subunit 5A
    Names
    Os02g0767100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      32790681..32795925
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771310.3 → XP_015626796.1  THO complex subunit 5A

      UniProtKB/TrEMBL
      B9F3F0
      Conserved Domains (1) summary
      pfam09766
      Location:84 → 433
      FimP; Fms-interacting protein
    Nucleotide Protein
    Heading Accession and Version

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