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    LOC4345589 nucleobase-ascorbate transporter 6 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345589, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4345589
    Gene description
    nucleobase-ascorbate transporter 6
    Locus tag
    OSNPB_080420600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1188_F05.18
    Expression
    Biased expression in flower buds (RPKM 8.5), flowers (RPKM 6.1) and 2 other tissues See more
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    Genomic context

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    Location:
    chromosome: 8
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (20266530..20270633)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (20129194..20133567)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112936152 Neighboring gene protein FAR1-RELATED SEQUENCE 5-like Neighboring gene uncharacterized LOC4345590 Neighboring gene cyclin-D1-2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nucleobase-ascorbate transporter 6
    Names
    Os08g0420600
    putative permease

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      20266530..20270633
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026020040.2 → XP_025875825.2  nucleobase-ascorbate transporter 6

      UniProtKB/TrEMBL
      A3BT75, B8BAU7, Q6ZIE6

    2. XM_015792780.3 → XP_015648266.1  nucleobase-ascorbate transporter 6

      UniProtKB/TrEMBL
      A3BT75, B8BAU7, Q6ZIE6
      Conserved Domains (1) summary
      cl23746
      Location:38 → 443
      Xan_ur_permease; Permease family
    Nucleotide Protein
    Heading Accession and Version

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