LOC4329959 hydroxycinnamoyltransferase 2-like [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4329959
Gene description: hydroxycinnamoyltransferase 2-like
Locus tag: OSNPB_020611800
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: HCT2; OsHCT2; OJ1004_A05.15
Expression: Broad expression in roots before flowering (RPKM 222.3), leaves after flowering (RPKM 78.0) and 4 other tissues See more
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 2

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
102	current	IRGSP-1.0 (GCF_001433935.1)	2	NC_029257.1 (24080659..24084617)

Chromosome 2 - NC_029257.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:: NC_029257.1 Chromosome 2 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help

See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables acyltransferase activity, transferring groups other than amino-acyl groups	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

Go to the top of the page Help

Preferred Names: hydroxycinnamoyltransferase 2

Names: BAHD-like hydroxycinnamoyl transferase HCT2; Hydroxycinnamoyltransferase 2; LOC_Os02g39850; Os02g0611800; putative hydroxyanthranilate hydroxycinnamoyltransferase 3; shikimate O-hydroxycinnamoyltransferase

XP_015626217.1

EC 2.3.1.-

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001416712.1 → NP_001403641.1 hydroxycinnamoyltransferase 2

Status: VALIDATED

Source sequence(s)

CB663173, CB663858, CB668041, CI193771, CI580528

UniProtKB/Swiss-Prot

Q6K638

UniProtKB/TrEMBL

A2X747, A3A8Z8

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

NC_029257.1 Reference IRGSP-1.0 Primary Assembly

Range

24080659..24084617

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015770731.2 → XP_015626217.1 hydroxycinnamoyltransferase 2

UniProtKB/Swiss-Prot

Q6K638

Conserved Domains (1) summary

cl23789
Location:1 → 441

PLN02481; Omega-hydroxypalmitate O-feruloyl transferase