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    LOC4332978 probable F-actin-capping protein subunit beta [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332978, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4332978
    Gene description
    probable F-actin-capping protein subunit beta
    Locus tag
    OSNPB_030381200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 27.0), flowers (RPKM 22.8) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (15466899..15470080)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (15115095..15118338)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4332976 Neighboring gene uncharacterized LOC4332977 Neighboring gene co-chaperone protein p23-1 Neighboring gene extensin

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables actin filament binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in actin cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in barbed-end actin filament capping IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell morphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of F-actin capping protein complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable F-actin-capping protein subunit beta
    Names
    Os03g0381200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      15466899..15470080
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015775969.3 → XP_015631455.1  probable F-actin-capping protein subunit beta isoform X1

      UniProtKB/TrEMBL
      A0A0P0VYZ3, B8AQJ7, Q0DRI4, Q75M66
      Conserved Domains (1) summary
      pfam01115
      Location:6 → 234
      F_actin_cap_B; F-actin capping protein, beta subunit

    2. XM_015775970.3 → XP_015631456.1  probable F-actin-capping protein subunit beta isoform X2

      Conserved Domains (1) summary
      pfam01115
      Location:6 → 228
      F_actin_cap_B; F-actin capping protein, beta subunit
    Nucleotide Protein
    Heading Accession and Version

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