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    LOC4327285 pectinesterase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327285, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4327285
    Gene description
    pectinesterase
    Locus tag
    OSNPB_010312500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4327285 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (11783057..11792453)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (11741335..11750757)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene cell wall / vacuolar inhibitor of fructosidase 2 Neighboring gene probable pectinesterase/pectinesterase inhibitor 41 Neighboring gene endoglucanase 3-like Neighboring gene uncharacterized LOC136354997

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables pectinesterase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pectinesterase inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell wall modification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pectinesterase
    Names
    B1011A07.22
    Os01g0312500
    putative pectinesterase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      11783057..11792453
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015770265.3 → XP_015625751.1  pectinesterase

      UniProtKB/TrEMBL
      B8A748, B9EVS6
      Conserved Domains (1) summary
      PLN02313
      Location:39 → 584
      PLN02313; Pectinesterase/pectinesterase inhibitor
    Nucleotide Protein
    Heading Accession and Version

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