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    LOC4343161 ultraviolet-B receptor UVR8 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343161, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4343161
    Gene description
    ultraviolet-B receptor UVR8
    Locus tag
    OSNPB_070459400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots before flowering (RPKM 27.0), flowers (RPKM 26.1) and 6 other tissues See more
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    Genomic context

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    See LOC4343161 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (16194170..16198026)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (16029423..16033387)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene protein ALP1-like Neighboring gene uncharacterized LOC9271235 Neighboring gene F-box/FBD/LRR-repeat protein At1g13570-like Neighboring gene uncharacterized LOC136357422

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    ultraviolet-B receptor UVR8
    Names
    OSJNBa0040K22.115
    Os07g0459400
    putative UVB-resistance protein UVR8

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      16194170..16198026
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015792121.3 → XP_015647607.1  ultraviolet-B receptor UVR8

      UniProtKB/TrEMBL
      B9FX29, Q0D6N4, Q84YP7
      Conserved Domains (1) summary
      COG5184
      Location:144 → 455
      ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]
    Nucleotide Protein
    Heading Accession and Version

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