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    LOC4345906 uncharacterized LOC4345906 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345906, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4345906
    Gene description
    uncharacterized LOC4345906
    Locus tag
    OSNPB_080491000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0686H11.1
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 14.4), roots after flowering (RPKM 11.3) and 6 other tissues See more
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    Genomic context

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    See LOC4345906 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (24403354..24410545)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (24263161..24272349)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4345903 Neighboring gene histone H2B.2-like Neighboring gene uncharacterized LOC136351409 Neighboring gene serine/threonine-protein kinase D6PK

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4345906
    Names
    Os08g0491000
    Os08g0491100
    P0605H02.41

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      24403354..24410545
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794582.3 → XP_015650068.1  uncharacterized protein LOC4345906 isoform X1

      UniProtKB/TrEMBL
      B8BC14
      Conserved Domains (3) summary
      TIGR02794
      Location:1039 → 1093
      tolA_full; TolA protein
      pfam03879
      Location:998 → 1090
      Cgr1; Cgr1 family
      pfam03941
      Location:1205 → 1253
      INCENP_ARK-bind; Inner centromere protein, ARK binding region

    2. XM_015794583.3 → XP_015650069.1  uncharacterized protein LOC4345906 isoform X2

      UniProtKB/TrEMBL
      B8BC14
      Conserved Domains (3) summary
      PRK10811
      Location:1017 → 1166
      rne; ribonuclease E; Reviewed
      TIGR02794
      Location:1039 → 1093
      tolA_full; TolA protein
      pfam03941
      Location:1206 → 1253
      INCENP_ARK-bind; Inner centromere protein, ARK binding region
    Nucleotide Protein
    Heading Accession and Version

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