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    LOC4343172 ABC transporter B family member 28 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343172, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4343172
    Gene description
    ABC transporter B family member 28
    Locus tag
    OSNPB_070464600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4343172 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (16539860..16551920)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (16375049..16387120)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene acetylserotonin O-methyltransferase 3-like Neighboring gene ethylene receptor 3-like Neighboring gene obtusifoliol 14-alpha demethylase-like Neighboring gene uncharacterized LOC136357425

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ABC-type oligopeptide transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in oligopeptide export from mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrial inner membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ABC transporter B family member 28
    Names
    Os07g0464600
    P0473C09.107
    putative ATP-binding cassette, sub-family B, member 10

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      16539860..16551920
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015789460.3 → XP_015644946.1  ABC transporter B family member 28

      UniProtKB/TrEMBL
      B8B5X1, B9FX41, Q69RG8
      Conserved Domains (1) summary
      COG1132
      Location:96 → 688
      MdlB; ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]

    RNA

    1. XR_001547197.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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