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    LOC4325505 transmembrane protein 56 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325505, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4325505
    Gene description
    transmembrane protein 56
    Locus tag
    OSNPB_010768200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 33.4), leaves before flowering (RPKM 29.9) and 6 other tissues See more
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    Genomic context

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    See LOC4325505 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (32381296..32385689, complement)

    Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene BTB/POZ domain and ankyrin repeat-containing protein NPR2-like Neighboring gene uncharacterized LOC4325504 Neighboring gene uncharacterized protein At4g15545 Neighboring gene auxin-responsive protein SAUR71

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in lipid homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transmembrane protein 56
    Names
    B1143G03.15
    Os01g0768200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

      Range
      32381296..32385689 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015783097.2 → XP_015638583.1  transmembrane protein 56 isoform X2

      UniProtKB/TrEMBL
      Q5ZAP1
      Conserved Domains (1) summary
      smart00724
      Location:71 → 251
      TLC; TRAM, LAG1 and CLN8 homology domains

    2. XM_015783005.2 → XP_015638491.1  transmembrane protein 56 isoform X1

      UniProtKB/TrEMBL
      A0A0N7KDT7, Q0JIZ9, Q5ZAP1
      Conserved Domains (1) summary
      smart00724
      Location:71 → 271
      TLC; TRAM, LAG1 and CLN8 homology domains

    3. XM_015783055.1 → XP_015638541.1  transmembrane protein 56 isoform X1

      UniProtKB/TrEMBL
      A0A0N7KDT7, Q0JIZ9, Q5ZAP1
      Conserved Domains (1) summary
      smart00724
      Location:71 → 271
      TLC; TRAM, LAG1 and CLN8 homology domains
    Nucleotide Protein
    Heading Accession and Version

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