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    LOC4334073 ATP-sulfurylase 3, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334073, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4334073
    Gene description
    ATP-sulfurylase 3, chloroplastic
    Locus tag
    OSNPB_030743900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4334073 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (31414668..31417959, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (30532235..30535419, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene calmodulin-like protein 4 Neighboring gene DExH-box ATP-dependent RNA helicase DExH12-like Neighboring gene uncharacterized LOC4334076 Neighboring gene stem-specific protein TSJT1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables adenylylsulfate kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sulfate adenylyltransferase (ATP) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in sulfate assimilation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ATP-sulfurylase 3, chloroplastic
    Names
    Os03g0743900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      31414668..31417959 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015776060.3 → XP_015631546.1  ATP-sulfurylase 3, chloroplastic

      UniProtKB/TrEMBL
      A0A0N7KI12, A2XLW5, Q84MN8
      Conserved Domains (1) summary
      TIGR00339
      Location:61 → 457
      sopT; ATP sulphurylase
    Nucleotide Protein
    Heading Accession and Version

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