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    LOC4336445 probable metal-nicotianamine transporter YSL11 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336445, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4336445
    Gene description
    probable metal-nicotianamine transporter YSL11
    Locus tag
    OSNPB_040524900
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    YSL11; osysl11; OsJ_014870
    Expression
    Biased expression in flowers (RPKM 3.2), flower buds (RPKM 1.7) and 2 other tissues See more
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    Genomic context

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    See LOC4336445 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (26755869..26760019)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (26252399..26256921)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene protein RETICULATA-RELATED 1, chloroplastic Neighboring gene probable metal-nicotianamine transporter YSL13 Neighboring gene probable metal-nicotianamine transporter YSL12 Neighboring gene large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic Neighboring gene UDP-glycosyltransferase 82A1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Rice metal-nicotianamine transporter, OsYSL2, is required for the long-distance transport of iron and manganese. Ishimaru Y, et al. Plant J, 2010 May. PMID 20128878

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. OsYSL2 contributes to the long-distance transport of iron into the shoot and seeds.
      Title: Rice metal-nicotianamine transporter, OsYSL2, is required for the long-distance transport of iron and manganese.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables oligopeptide transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable metal-nicotianamine transporter YSL11
    Names
    LOC_Os04g44330
    OSJNBa0038O10.1
    OSJNBb0065J09.18
    Protein YELLOW STRIPE LIKE 11

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001419678.1 → NP_001406607.1  probable metal-nicotianamine transporter YSL11

      Status: VALIDATED

      Source sequence(s)
      AB190921, AP014960
      UniProtKB/Swiss-Prot
      A0A0N7KJE0, Q0JBM0, Q25CH5, Q5JQD6, Q7X660

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      26755869..26760019
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7X660.1 GenPept UniProtKB/Swiss-Prot:Q7X660

    Gene LinkOut

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