LOC4351058 magnesium/proton exchanger 1-like [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4351058
Gene description: magnesium/proton exchanger 1-like
Locus tag: OSNPB_110660000
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: MHX1; OsJ_34726
Expression: Ubiquitous expression in roots before flowering (RPKM 15.8), flowers (RPKM 6.0) and 6 other tissues See more
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Genomic context

Location:: chromosome: 11

Exon count:: 10

Annotation release	Status	Assembly	Chr	Location
RS_2024_06	current	ASM3414082v1 (GCF_034140825.1)	11	NC_089045.1 (28449516..28453513, complement)
102	previous assembly	IRGSP-1.0 (GCF_001433935.1)	11	NC_029266.1 (26488387..26492387, complement)

Chromosome 11 - NC_089045.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Process	Evidence Code	Pubs
involved_in metal ion transport	IEA Inferred from Electronic Annotation more info	PubMed
involved_in transmembrane transport	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: magnesium/proton exchanger 1

Names: LOC_Os11g43860; Mg(2+)/H(+) exchanger 1; Zinc/proton exchanger 1; Zn(2+)/H(+) exchanger 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001423232.1 → NP_001410161.1 magnesium/proton exchanger 1

Status: VALIDATED

Source sequence(s)

AK066709, CI475849, CI639341, CI742774

UniProtKB/Swiss-Prot

A0A0P0Y543, B9G8Q2, Q2R040, Q2R041

UniProtKB/TrEMBL

A2X7R8

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

NC_089045.1 Reference ASM3414082v1 Primary Assembly

Range

28449516..28453513 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_066305065.1 → XP_066161162.1 magnesium/proton exchanger 1 isoform X1

UniProtKB/Swiss-Prot

A0A0P0Y543, B9G8Q2, Q2R040, Q2R041

UniProtKB/TrEMBL

A2X7R8