LOC4338560 beta-glucosidase 22-like [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4338560
Gene description: beta-glucosidase 22-like
Locus tag: OSNPB_050366600
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: BGLU22; Os5bglu22
Expression: Broad expression in roots before flowering (RPKM 38.4), leaves after flowering (RPKM 27.8) and 6 other tissues See more
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Genomic context

Location:: chromosome: 5

Exon count:: 13

Annotation release	Status	Assembly	Chr	Location
102	current	IRGSP-1.0 (GCF_001433935.1)	5	NC_029260.1 (17594914..17600510)

Chromosome 5 - NC_029260.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_029260.1 Chromosome 5 Reference IRGSP-1.0 Primary Assembly

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables beta-glucosidase activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in carbohydrate metabolic process	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: beta-glucosidase 22

Names: LOC_Os05g30350; OSJNBa0090H02.10

XP_015640028.1

EC 3.2.1.21

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001420397.1 → NP_001407326.1 beta-glucosidase 22 precursor

Status: VALIDATED

Source sequence(s)

AU096577, CB660592, CB662189, CB662190, CI597686

UniProtKB/Swiss-Prot

A0A0P0WLG6, Q60DX8

UniProtKB/TrEMBL

B8AXF2

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

NC_029260.1 Reference IRGSP-1.0 Primary Assembly

Range

17594914..17600510

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015784542.1 → XP_015640028.1 beta-glucosidase 22

UniProtKB/Swiss-Prot

Q60DX8

Conserved Domains (1) summary

cl23725
Location:42 → 521

Glyco_hydro_1; Glycosyl hydrolase family 1