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    LOC4338815 pheophytinase, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338815, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4338815
    Gene description
    pheophytinase, chloroplastic
    Locus tag
    OSNPB_050419000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 31.0), leaves after flowering (RPKM 14.6) and 4 other tissues See more
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    Genomic context

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    See LOC4338815 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (20536379..20539880, complement)

    Chromosome 5 - NC_029260.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At4g14050, mitochondrial-like Neighboring gene NAC domain-containing protein 35 Neighboring gene PHD finger protein ALFIN-LIKE 5-like Neighboring gene protein root UVB sensitive 6

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029260.1 Chromosome 5 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chlorophyllase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chlorophyll metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pheophytinase, chloroplastic
    Names
    Os05g0419000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029260.1 Reference IRGSP-1.0 Primary Assembly

      Range
      20536379..20539880 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015784708.2 → XP_015640194.1  pheophytinase, chloroplastic

      UniProtKB/TrEMBL
      A0A0P0WMF6, B9FIP1, Q60DW4
      Conserved Domains (1) summary
      PLN02679
      Location:93 → 392
      PLN02679; hydrolase, alpha/beta fold family protein
    Nucleotide Protein
    Heading Accession and Version

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