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    LOC4328286 eukaryotic initiation factor 4A-3-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328286, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4328286
    Gene description
    eukaryotic initiation factor 4A-3-like
    Locus tag
    OSNPB_020146600
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    eIF4A-2; eIF-4A-3; OsJ_05367; OJ1008_C03.10
    Expression
    Ubiquitous expression in flowers (RPKM 128.4), flower buds (RPKM 98.6) and 6 other tissues See more
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    Genomic context

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    See LOC4328286 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (2565371..2568908)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (2557564..2561015)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4328284 Neighboring gene dolichol kinase EVAN Neighboring gene 26S proteasome non-ATPase regulatory subunit 2 homolog A Neighboring gene uncharacterized LOC107275532

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    eukaryotic initiation factor 4A-3
    Names
    ATP-dependent RNA helicase eIF4A-3
    DEAD-box ATP-dependent RNA helicase 23
    LOC_Os02g05330
    eucaryotic initiation factor
    putative translational initiation factor eIF-4A
    NP_001393374.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001406445.1 → NP_001393374.1  eukaryotic initiation factor 4A-3

      Status: VALIDATED

      Source sequence(s)
      CI392597, KC140119
      UniProtKB/Swiss-Prot
      B7EMF9, Q6Z2Z4, Q9AR32
      UniProtKB/TrEMBL
      A0A0N7KMN9, A2X0V4

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      2565371..2568908
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6Z2Z4.1 GenPept UniProtKB/Swiss-Prot:Q6Z2Z4

    Gene LinkOut

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