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    LOC4334509 calreticulin-2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334509, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4334509
    Gene description
    calreticulin-2
    Locus tag
    OSNPB_030807400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 20.1), roots after flowering (RPKM 9.9) and 6 other tissues See more
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    Genomic context

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    See LOC4334509 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (34716572..34723143, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (33743903..33750496, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene protein neprosin Neighboring gene uncharacterized LOC4334508 Neighboring gene blue copper protein Neighboring gene cycloartenol-C-24-methyltransferase 1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables unfolded protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein folding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    calreticulin-2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      34716572..34723143 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015776868.2 → XP_015632354.1  calreticulin-2 isoform X2

      UniProtKB/TrEMBL
      B8ALT5, B9F6V5, Q84M42
      Conserved Domains (1) summary
      pfam00262
      Location:66 → 253
      Calreticulin; Calreticulin family

    2. XM_066308924.1 → XP_066165021.1  calreticulin-2 isoform X2

      UniProtKB/TrEMBL
      B8ALT5, B9F6V5, Q84M42

    3. XM_066308922.1 → XP_066165019.1  calreticulin-2 isoform X1

      UniProtKB/TrEMBL
      Q84M42

    4. XM_066308923.1 → XP_066165020.1  calreticulin-2 isoform X1

      UniProtKB/TrEMBL
      Q84M42

    RNA

    1. XR_001544749.3 RNA Sequence

    2. XR_010740273.1 RNA Sequence

    3. XR_010740274.1 RNA Sequence

    4. XR_001544750.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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