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    LOC4334171 alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334171, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4334171
    Gene description
    alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic
    Locus tag
    OSNPB_030758100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    pho1
    Expression
    Broad expression in milk grains (RPKM 238.7), flower buds (RPKM 73.7) and 4 other tissues See more
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    Genomic context

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    See LOC4334171 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (31332021..31339259, complement)

    Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene UDP-glucose 6-dehydrogenase 3-like Neighboring gene probable WRKY transcription factor 57 Neighboring gene cyclic nucleotide-gated ion channel 2 Neighboring gene 26S proteasome non-ATPase regulatory subunit 10

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. The Rice Plastidial Phosphorylase Participates Directly in Both Sink and Source Processes. Koper K, et al. Plant Cell Physiol, 2021 Mar 25. PMID 33237266
    2. Rice Endosperm Starch Phosphorylase (Pho1) Assembles with Disproportionating Enzyme (Dpe1) to Form a Protein Complex That Enhances Synthesis of Malto-oligosaccharides. Hwang SK, et al. J Biol Chem, 2016 Sep 16. PMID 27502283, Free PMC Article
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The Rice Plastidial Phosphorylase Participates Directly in Both Sink and Source Processes.
      Title: The Rice Plastidial Phosphorylase Participates Directly in Both Sink and Source Processes.
    2. the assembly with OsDpe1 enables OsPho1 to utilize products of transglycosylation reactions involving G1 and G3, sugars that it cannot catalyze directly.
      Title: Rice Endosperm Starch Phosphorylase (Pho1) Assembles with Disproportionating Enzyme (Dpe1) to Form a Protein Complex That Enhances Synthesis of Malto-oligosaccharides.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables glycogen phosphorylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pyridoxal phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in glycogen catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic
    Names
    Os03g0758100
    plastidial starch phosphorylase 1
    starch phosphorylase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

      Range
      31332021..31339259 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015775934.2 → XP_015631420.1  alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic

      UniProtKB/TrEMBL
      B3IYE3
      Conserved Domains (2) summary
      cd04300
      Location:82 → 972
      GT1_Glycogen_Phosphorylase; This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of ...
      TIGR02093
      Location:85 → 972
      P_ylase; glycogen/starch/alpha-glucan phosphorylases
    Nucleotide Protein
    Heading Accession and Version

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