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    LOC4345500 protein PXR1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345500, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4345500
    Gene description
    protein PXR1
    Locus tag
    OSNPB_080398500
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1051_A08.6; OJ1198_B10.18
    Expression
    Biased expression in flower buds (RPKM 33.4) and flowers (RPKM 5.3) See more
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    Genomic context

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    See LOC4345500 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (19153384..19154593, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (19017225..19018498, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene ABC transporter A family member 7 Neighboring gene hypersensitive-induced response protein 1-like Neighboring gene aminopeptidase M1-B-like Neighboring gene pre-mRNA cleavage factor Im 25 kDa subunit 1 Neighboring gene uncharacterized LOC107277262

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    protein PXR1
    Names
    KED-like protein
    Os08g0398500

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001422560.1 → NP_001409489.1  protein PXR1

      Status: VALIDATED

      Source sequence(s)
      AK072742
      UniProtKB/TrEMBL
      Q0J5V6, Q6ZIV6, Q6ZJT5

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      19153384..19154593 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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