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    LOC4327981 glycerate dehydrogenase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327981, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4327981
    Gene description
    glycerate dehydrogenase
    Locus tag
    OSNPB_020101500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1435_F07.8-1
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    Genomic context

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    See LOC4327981 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (85986..89758, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (79726..82953, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene amino acid transporter AVT1C Neighboring gene translation initiation factor IF3-1, mitochondrial Neighboring gene GDSL esterase/lipase EXL3 Neighboring gene SKP1-like protein 1 Neighboring gene E3 ubiquitin-protein ligase UPL3 Neighboring gene kinesin-like protein KIN-6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables NAD binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables glyoxylate reductase (NADPH) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables hydroxypyruvate reductase (NADH) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables hydroxypyruvate reductase [NAD(P)H] activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glycerate dehydrogenase
    Names
    B1370C05.18-1
    Os02g0101500
    putative hydroxypyruvate reductase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      85986..89758 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015769681.2 → XP_015625167.1  glycerate dehydrogenase

      UniProtKB/TrEMBL
      B8AGU8, B9F1N6, Q6YU90
      Conserved Domains (1) summary
      PLN02306
      Location:1 → 386
      PLN02306; hydroxypyruvate reductase
    Nucleotide Protein
    Heading Accession and Version

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