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    LOC4341959 probable aminodeoxychorismate synthase, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341959, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4341959
    Gene description
    probable aminodeoxychorismate synthase, chloroplastic
    Locus tag
    OSNPB_060699700
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    ADCS
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    Genomic context

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    See LOC4341959 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (30279979..30285669)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (29413306..29418981)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene macrophage migration inhibitory factor homolog Neighboring gene protein CHLOROPLAST IMPORT APPARATUS 2 Neighboring gene putative clathrin assembly protein At5g57200 Neighboring gene 26S proteasome non-ATPase regulatory subunit 2 homolog A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 4-amino-4-deoxychorismate synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in folic acid-containing compound biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in para-aminobenzoic acid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable aminodeoxychorismate synthase, chloroplastic
    Names
    ADC synthase
    LOC_Os06g48620
    P-aminobenzoic acid synthase
    P0468G03.14
    PABA synthase
    Para-aminobenzoate synthase
    putative aminodeoxychorismate synthase/glutamin amidotransferase
    NP_001408767.1
    XP_015643127.1
    XP_015643129.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001421838.1 → NP_001408767.1  probable aminodeoxychorismate synthase, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      AK059492, AP014962, CI373893
      UniProtKB/Swiss-Prot
      Q0D9T5, Q5Z856
      UniProtKB/TrEMBL
      A2YGN6

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      30279979..30285669
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015787641.3 → XP_015643127.1  probable aminodeoxychorismate synthase, chloroplastic isoform X1

      UniProtKB/TrEMBL
      A2YGN6
      Conserved Domains (1) summary
      PLN02889
      Location:49 → 872
      PLN02889; oxo-acid-lyase/anthranilate synthase

    2. XM_015787643.3 → XP_015643129.1  probable aminodeoxychorismate synthase, chloroplastic isoform X2

      Conserved Domains (4) summary
      COG0147
      Location:224 → 708
      TrpE; Anthranilate/para-aminobenzoate synthases component I [Amino acid transport and metabolism, Coenzyme transport and metabolism]
      pfam04715
      Location:222 → 365
      Anth_synt_I_N; Anthranilate synthase component I, N terminal region
      cl00020
      Location:11 → 125
      GAT_1; Type 1 glutamine amidotransferase (GATase1)-like domain
      cl10555
      Location:430 → 696
      Chorismate_bind; chorismate binding enzyme
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5Z856.1 GenPept UniProtKB/Swiss-Prot:Q5Z856

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