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    LOC4347902 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347902, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4347902
    Gene description
    5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase, chloroplastic
    Locus tag
    OSNPB_090569100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1003_C09.19
    Expression
    Broad expression in roots after flowering (RPKM 93.4), leaves after flowering (RPKM 82.7) and 6 other tissues See more
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    Genomic context

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    See LOC4347902 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (27152889..27154710)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (22707628..22709557)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S25-2 Neighboring gene uncharacterized protein At2g27730, mitochondrial Neighboring gene beta-amylase 2, chloroplastic Neighboring gene uncharacterized LOC9266508

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase, chloroplastic
    Names
    Os09g0569100
    putative genetic modifier
    sugar phosphatase YfbT

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      27152889..27154710
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015756180.3 → XP_015611666.1  5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase, chloroplastic

      UniProtKB/TrEMBL
      A2Z482, A3C1P0, Q0IZH6, Q652P6
      Conserved Domains (1) summary
      PLN02575
      Location:3 → 383
      PLN02575; haloacid dehalogenase-like hydrolase
    Nucleotide Protein
    Heading Accession and Version

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