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    LOC9271427 ACT domain-containing protein DS12, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9271427, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC9271427
    Gene description
    ACT domain-containing protein DS12, chloroplastic
    Locus tag
    OSNPB_080242700
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in leaves before flowering (RPKM 397.0), roots after flowering (RPKM 280.9) and 3 other tissues See more
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    Genomic context

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    See LOC9271427 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (8721844..8725779, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (8668950..8672938, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene plasma membrane ATPase-like Neighboring gene WUSCHEL-related homeobox 10-like Neighboring gene RNA polymerase sigma factor sigF, chloroplastic Neighboring gene uncharacterized LOC4345045

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in chloroplast stroma IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in chloroplast thylakoid membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    aCT domain-containing protein DS12, chloroplastic
    Names
    LOC_Os08g14440

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001424555.1 → NP_001411484.1  aCT domain-containing protein DS12, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      CB659425, CB681453, CB684441, CI457330, CI642513
      UniProtKB/Swiss-Prot
      A2YST8, B8BC84, P83643, Q0J709
      UniProtKB/TrEMBL
      B9FZT1

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      8721844..8725779 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795598.3 → XP_015651084.1  aCT domain-containing protein DS12, chloroplastic isoform X1

      UniProtKB/TrEMBL
      B9FZT1
      Conserved Domains (3) summary
      cd04873
      Location:206 → 271
      ACT_UUR-ACR-like; ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD
      PRK00275
      Location:107 → 270
      glnD; PII uridylyl-transferase; Provisional
      PRK03381
      Location:56 → 123
      PRK03381; PII uridylyl-transferase; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0J709.2 GenPept UniProtKB/Swiss-Prot:Q0J709

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