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    LOC4326615 DEAD-box ATP-dependent RNA helicase 26-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326615, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4326615
    Gene description
    DEAD-box ATP-dependent RNA helicase 26-like
    Locus tag
    OSNPB_010618500
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsJ_02629; B1040D09.7
    Expression
    Ubiquitous expression in roots after flowering (RPKM 18.6), leaves after flowering (RPKM 16.1) and 6 other tissues See more
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    Genomic context

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    See LOC4326615 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (25180408..25183707)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (24602227..24605528)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9271825 Neighboring gene DEAD-box ATP-dependent RNA helicase 25-like Neighboring gene phospholipase A1 PLIP1, chloroplastic Neighboring gene ATP-dependent zinc metalloprotease FTSH 9, chloroplastic/mitochondrial-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    dEAD-box ATP-dependent RNA helicase 26
    Names
    DEAD-box ATP-dependent RNA helicase 26
    LOC_Os01g43130
    myc-regulated DEAD/H box 18 RNA helicase-like
    NP_001384969.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001398040.1 → NP_001384969.1  dEAD-box ATP-dependent RNA helicase 26

      Status: VALIDATED

      Source sequence(s)
      AK067476, AP014957, CI331637
      UniProtKB/Swiss-Prot
      B9EY35, Q0JL73, Q5ZBH4
      UniProtKB/TrEMBL
      B8ABX0
      Conserved Domains (1) summary
      COG0513
      Location:68 → 422
      SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      25180408..25183707
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0JL73.1 GenPept UniProtKB/Swiss-Prot:Q0JL73

    Gene LinkOut

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