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    LOC4343341 SH3 domain-containing protein 3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343341, updated on 12-Jul-2024

    Summary

    Gene symbol
    LOC4343341
    Gene description
    SH3 domain-containing protein 3
    Locus tag
    OSNPB_070508300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1163_G04.105
    Expression
    Ubiquitous expression in roots after flowering (RPKM 15.6), leaves after flowering (RPKM 15.2) and 6 other tissues See more
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    Genomic context

    Location:
    chromosome: 7
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (19536354..19541840, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (19309967..19315478, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 Neighboring gene protein FLX-like 1 Neighboring gene mitotic checkpoint serine/threonine-protein kinase BUB1 Neighboring gene dof zinc finger protein MNB1A

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General protein information

    Preferred Names
    SH3 domain-containing protein 3
    Names
    Os07g0508300
    putative SH3(Src homology) domain-containing protein

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      19536354..19541840 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015792099.2XP_015647585.1  SH3 domain-containing protein 3

      UniProtKB/TrEMBL
      A2YLP5, A3BK63, Q8LIJ9
      Conserved Domains (2) summary
      cl12013
      Location:48255
      BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature
      cl17036
      Location:283334
      SH3; Src Homology 3 domain superfamily