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    LOC4327063 nuclear pore complex protein NUP35 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327063, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4327063
    Gene description
    nuclear pore complex protein NUP35
    Locus tag
    OSNPB_010200500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    B1015E06.9
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    Genomic context

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    See LOC4327063 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (5452212..5455607)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (5442840..5446319)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene homeobox-leucine zipper protein HOX29-like Neighboring gene uncharacterized LOC4327349 Neighboring gene ethylene-responsive transcription factor ERF039 Neighboring gene probable serine/threonine-protein kinase At1g54610

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phospholipid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of nuclear pore IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in NLS-bearing protein import into nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nuclear pore organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nuclear membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of nuclear pore central transport channel IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of nuclear pore nuclear basket IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclear pore complex protein NUP35
    Names
    Os01g0200500

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      5452212..5455607
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766457.3 → XP_015621943.1  nuclear pore complex protein NUP35

      UniProtKB/TrEMBL
      A0A0P0UZG6, B9ETY0, Q5QN03
      Conserved Domains (1) summary
      pfam05172
      Location:172 → 254
      Nup35_RRM; Nup53/35/40-type RNA recognition motif
    Nucleotide Protein
    Heading Accession and Version

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