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    LOC4339690 putative FBD-associated F-box protein At5g53635 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339690, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4339690
    Gene description
    putative FBD-associated F-box protein At5g53635
    Locus tag
    OSNPB_050575400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    Os05g0575500
    Expression
    Ubiquitous expression in flower buds (RPKM 4.3), leaves before flowering (RPKM 4.2) and 6 other tissues See more
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    Genomic context

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    See LOC4339690 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (28848603..28852332)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (28663255..28668919)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4339688 Neighboring gene translation initiation factor IF-2, chloroplastic Neighboring gene uncharacterized LOC136356547 Neighboring gene uncharacterized LOC107281009

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative FBD-associated F-box protein At5g53635; uncharacterized protein LOC4339690
    Names
    F-box domain and LRR containing protein
    Os05g0575400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      28848603..28852332
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015783970.3 → XP_015639456.1  putative FBD-associated F-box protein At5g53635 isoform X1

      UniProtKB/TrEMBL
      B9FIG7
      Conserved Domains (4) summary
      PLN03210
      Location:201 → 398
      PLN03210; Resistant to P. syringae 6; Provisional
      sd00032
      Location:182 → 203
      LRR_2; leucine-rich repeat [structural motif]
      pfam00646
      Location:50 → 90
      F-box; F-box domain
      pfam08387
      Location:429 → 463
      FBD

    2. XM_066310583.1 → XP_066166680.1  uncharacterized protein LOC4339690 isoform X2

    Nucleotide Protein
    Heading Accession and Version

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