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    LOC4346891 uncharacterized LOC4346891 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346891, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4346891
    Gene description
    uncharacterized LOC4346891
    Locus tag
    OSNPB_090371000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots before flowering (RPKM 24.2), leaves after flowering (RPKM 23.3) and 5 other tissues See more
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    Genomic context

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    Location:
    chromosome: 9
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (16703036..16706976)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (12345729..12349688)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like Neighboring gene putative GPI-anchored protein pfl2 Neighboring gene uncharacterized LOC107276672 Neighboring gene uncharacterized LOC4346892

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4346891
    Names
    B1168F12.22
    Os09g0371000
    transporter-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      16703036..16706976
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066304394.1 → XP_066160491.1  uncharacterized protein LOC4346891 isoform X2

    2. XM_015795851.2 → XP_015651337.1  uncharacterized protein LOC4346891 isoform X1

      UniProtKB/TrEMBL
      A2Z0J2, A3BY63, Q6H4F1
      Conserved Domains (2) summary
      cd06174
      Location:13 → 407
      MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
      pfam07690
      Location:13 → 386
      MFS_1; Major Facilitator Superfamily
    Nucleotide Protein
    Heading Accession and Version

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