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    LOC4344170 condensin-1 complex subunit CAP-D2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344170, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4344170
    Gene description
    condensin-1 complex subunit CAP-D2
    Locus tag
    OSNPB_070659500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1477_F01.124
    Expression
    Broad expression in flower buds (RPKM 4.1), flowers (RPKM 2.8) and 4 other tissues See more
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    Genomic context

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    Location:
    chromosome: 7
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (28018725..28027119, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (27791077..27799521, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4344168 Neighboring gene uncharacterized LOC4344169 Neighboring gene annexin D3 Neighboring gene F-box protein SKIP5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in meiotic chromosome condensation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitotic cell cycle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitotic chromosome condensation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in condensed chromosome, centromeric region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of condensin complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    condensin-1 complex subunit CAP-D2
    Names
    Os07g0659500
    P0496C02.109
    condensin complex subunit 1
    putative condensin subunit 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      28018725..28027119 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015789525.3 → XP_015645011.1  condensin-1 complex subunit CAP-D2 isoform X1

      UniProtKB/TrEMBL
      B8B5J1, B9FUN8
      Conserved Domains (4) summary
      COG5098
      Location:161 → 1145
      COG5098; Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
      pfam12717
      Location:969 → 1134
      Cnd1; non-SMC mitotic condensation complex subunit 1
      pfam12922
      Location:84 → 244
      Cnd1_N; non-SMC mitotic condensation complex subunit 1, N-term
      sd00044
      Location:957 → 982
      HEAT; HEAT repeat [structural motif]

    2. XM_066312605.1 → XP_066168702.1  condensin-1 complex subunit CAP-D2 isoform X2

      UniProtKB/TrEMBL
      B8B5J1, Q0D3Y3, Q7XAM6
    Nucleotide Protein
    Heading Accession and Version

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