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    LOC4331508 protein NLP1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331508, updated on 6-Jun-2024

    Summary

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    Gene symbol
    LOC4331508
    Gene description
    protein NLP1-like
    Locus tag
    OSNPB_030131100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    NLP1; OsNLP1; OsJ_09292; OJ1004C08.16
    Expression
    Broad expression in roots after flowering (RPKM 23.9), leaves after flowering (RPKM 17.4) and 6 other tissues See more
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    Genomic context

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    See LOC4331508 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (1776300..1781470, complement)

    Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene probable serine/threonine-protein kinase PBL21 Neighboring gene probable serine/threonine-protein kinase PIX13 Neighboring gene catalase-1 Neighboring gene ubiquitin domain-containing protein DSK2a

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein NLP1
    Names
    LOC_Os03g03900
    NIN-like protein 1
    Nodule inception protein-like protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001417175.1 → NP_001404104.1  protein NLP1

      Status: VALIDATED

      Source sequence(s)
      AK100046, AP014959, AU055990, AU055991, CB649329, CF306800, CI373964
      UniProtKB/Swiss-Prot
      A0A0N7KGI8, A3ADT0, Q10S83
      UniProtKB/TrEMBL
      A2XC34

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

      Range
      1776300..1781470 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015774258.2 → XP_015629744.1  protein NLP1

      UniProtKB/Swiss-Prot
      A0A0N7KGI8, A3ADT0, Q10S83
      UniProtKB/TrEMBL
      A2XC34
      Conserved Domains (2) summary
      cd06407
      Location:845 → 926
      PB1_NLP; A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which ...
      pfam02042
      Location:622 → 670
      RWP-RK; RWP-RK domain

    2. XM_015774259.2 → XP_015629745.1  protein NLP1

      UniProtKB/Swiss-Prot
      Q10S83
      Conserved Domains (2) summary
      cd06407
      Location:845 → 926
      PB1_NLP; A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which ...
      pfam02042
      Location:622 → 670
      RWP-RK; RWP-RK domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q10S83.1 GenPept UniProtKB/Swiss-Prot:Q10S83

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