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    LOC4343743 putative MO25-like protein At5g47540 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343743, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4343743
    Gene description
    putative MO25-like protein At5g47540
    Locus tag
    OSNPB_070585100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in mature seeds (RPKM 64.9), flower buds (RPKM 39.6) and 6 other tissues See more
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    Genomic context

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    See LOC4343743 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (23983301..23990057)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (23753113..23760578)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene U-box domain-containing protein 4 Neighboring gene hyphally regulated cell wall protein 3 Neighboring gene uncharacterized LOC9269957 Neighboring gene cysteine-rich and transmembrane domain-containing protein WIH2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein serine/threonine kinase activator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative MO25-like protein At5g47540
    Names
    Os07g0585100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      23983301..23990057
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015792067.2 → XP_015647553.1  putative MO25-like protein At5g47540

      UniProtKB/TrEMBL
      A0A0N7KNR8, B9FY47, Q0D536
      Conserved Domains (1) summary
      pfam08569
      Location:4 → 336
      Mo25; Mo25-like
    Nucleotide Protein
    Heading Accession and Version

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