LOC4325026 E3 ubiquitin-protein ligase AIRP2 [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4325026
Gene description: E3 ubiquitin-protein ligase AIRP2
Locus tag: OSNPB_010905700
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression: Ubiquitous expression in flowers (RPKM 44.9), flower buds (RPKM 38.7) and 6 other tissues See more
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Genomic context

Location:: chromosome: 1

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
102	current	IRGSP-1.0 (GCF_001433935.1)	1	NC_029256.1 (39428991..39432425)

Chromosome 1 - NC_029256.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:: NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

OsMTD2-mediated reactive oxygen species (ROS) balance is essential for intact pollen-tube elongation in rice.
Title: OsMTD2-mediated reactive oxygen species (ROS) balance is essential for intact pollen-tube elongation in rice.

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables ubiquitin protein ligase activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in protein ubiquitination	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: E3 ubiquitin-protein ligase AIRP2

Names: OSJNOa108M02.10; Os01g0905700; putative MTD2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001406186.1 → NP_001393115.1 E3 ubiquitin-protein ligase AIRP2

Status: VALIDATED

Source sequence(s)

AK104453

UniProtKB/TrEMBL

B8A7T2, B9EVG0, Q5N6U7

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

NC_029256.1 Reference IRGSP-1.0 Primary Assembly

Range

39428991..39432425

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015766349.2 → XP_015621835.1 E3 ubiquitin-protein ligase AIRP2

UniProtKB/TrEMBL

Q5N6U7

Conserved Domains (1) summary

cl17238
Location:156 → 194

RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain